Does the Autoimmune Protocol Diet Help Rheumatoid Arthritis?

Among people with rheumatoid arthritis (RA), there is a popular notion that RA can be managed with diet, thereby skipping the undesirable side effects associated with certain medications. There is even an autoimmune protocol (AIP) diet which, by its name alone, makes you think you should be on board.
RELATED: Can the Paleo Diet Help Fight Autoimmune Diseases? A Look at Its Possible Effects on 5 Conditions
What Is the Autoimmune Protocol Diet?
In autoimmune diseases, the body mistakenly attacks its own tissues, causing damage. The autoimmune protocol diet presumably works on inflammation in the gut, which is thought to be associated with autoimmune disease. Specifically, the AIP diet is thought to heal the immune system and the gut mucosa (lining), impacting inflammatory diseases, such as rheumatoid arthritis.
Is the AIP Diet the Same as the Paleo Diet?
The autoimmune protocol diet is considered the same as the paleo diet by some. You will also see AIP called a “version” of the paleo diet. Some say it is a stricter version of the paleo diet. The principle behind the AIP diet is that autoimmune conditions are caused by “leaky gut,” or altered intestinal permeability. In leaky gut syndrome, food leaks through tiny holes in the gut, provoking a response — actually an overreaction — by the immune system, notes the Cleveland Clinic.
RELATED: 6 Foods to Avoid When You Have Rheumatoid Arthritis
With the AIP diet, you eat foods that are rich in nutrients and steer clear of foods that are considered pro-inflammatory. Through diet, the goal is to not provoke an autoimmune response by the immune system. Summary of goals: Avoid irritating the gut with foods, heal holes in the gut, and reduce inflammation and other symptoms of autoimmune disease.
How the Autoimmune Protocol Diet Was Developed
The autoimmune protocol diet has been attributed to Loren Cordain, PhD, a scientist who discovered that certain foods can sometimes trigger inflammation in people with autoimmune disease. Author Robb Wolf outlined the autoimmune protocol in his book, The Paleo Solution, introducing it as an elimination diet.
Sarah Ballantyne, PhD, (also known as The Paleo Mom) became interested in the autoimmune protocol, researched the science behind it, and wrote about it in her book, The Paleo Approach. Dr. Ballantyne is considered a leading expert on the autoimmune protocol.
Foods That Are Allowed and Disallowed on the Autoimmune Protocol Diet
The AIP diet allows you to eat:
- Meat (preferably grass-fed) and fish
- Vegetables, excluding nightshade vegetables
- Sweet potatoes
- Fruit in small quantities
- Coconut milk
- Avocado, olive, and coconut oil
- Dairy-free fermented foods (such as kombucha, sauerkraut, kefir made with coconut milk, or kimchi)
- Honey or maple syrup in small quantities
- Fresh nonseed herbs (such as basil, mint, or oregano)
- Green tea, and nonseed herbal teas
- Bone broth
- Vinegars
- Grass-fed gelatin and arrowroot starch
The AIP diet does not allow you to eat:
- All grains (including oats, wheat, and rice)
- All dairy
- Eggs
- Nuts and seeds
- Legumes and beans
- Nightshade vegetables (tomatoes, potatoes, eggplant, peppers)
- All sugars, including alternative sugars, such as stevia and xylitol
- Butter and ghee (clarified butter)
- Oils (other than coconut oil, olive oil, and avocado oil, which are allowed)
- Herbs derived from seeds
- Food additives or processed foods
- Chocolate
- Alcohol
Does the Autoimmune Protocol Diet Work for People With RA?
Researchers have been looking into the role of diet in leaky gut and autoimmune disease since at least 2011. A review article in Frontiers in Immunity suggested that, in some people, leaky gut may be linked to the development of autoimmune disease. But there are still no conclusive clinical studies with regard to the role of diet in leaky gut and autoimmune disease.
Rheumatoid Arthritis Likely Has Multiple Causes and Risk Factors
According to research in the journal FEBS Letters: “Rheumatoid arthritis is a multifactorial disease that involves both genetic and environmental factors. Among genetic factors, human leukocyte antigen (HLA) alleles provide the strongest risk, while among environmental factors, smoking and infections are involved. The role of hormones and changes in immune the system during aging are also associated with the pathogenesis of rheumatoid arthritis. All the factors that influence RA also impact the gut microbial composition. Gut microbiome provides a link between all the factors that influence RA. An individual may harbor a core gut microbiome and certain species may contract or expand depending on the exposure to various environmental factors, thus influencing the immune system locally in the gut as well as the adaptive immune system.”
Some Research Suggests Diet Influences Gut Health, Which May Play a Role in RA Development
But, according to a review from 2021: “Diet affects the composition of the gut microbiome and its secreted metabolites, another important environmental trigger. In recent years it turned out that a dysbiosed gut microbiota correlates with the development of several chronic diseases including RA. Still, besides the intensive research that was done to investigate the gut microbiota composition, the direct effects that cause gut dysbiosis and its consequence to RA disease onset is not fully understood. Further, it still remains unclear whether dysbiosis is the cause or consequence of inflammation.”
What we have are more questions, and we find ourselves without the answers.
RELATED: Foods That Fight Rheumatoid Arthritis Inflammation
There Appears to Be Gut Involvement in Rheumatoid Arthritis
There is no specific diet that has been proven to help RA. The impact of diet on RA remains theoretical. It’s trial-and-error at best. Essentially, it’s an elimination diet, whereby you eliminate foods regarded as inflammatory and reintroduce them into your diet over time to see their effect on you individually. That’s the best we have at this stage because nothing about diet has been proven to help RA patients collectively.
A small study concluded that the autoimmune protocol diet can have an effect on inflammatory bowel disease (IBD). There were 15 patients with either Crohn’s disease or ulcerative colitis enrolled in the study. They took six weeks to phase out the disallowed foods in the autoimmune protocol, followed by five weeks maintaining the protocol. Eleven of the 15 study participants had a complete remission. Great news for sure. But 15 is a very small study group — and there was no control group, and the study was not randomized.
Some Research Hints That AIP May Help Decrease Inflammation
A pilot study involving patients with Hashimoto’s thyroiditis (the most common form of autoimmune thyroid disease) suggested that the AIP diet and concomitant lifestyle modification, implemented by a multidisciplinary team, can be safely used as adjunctive treatments for people with Hashimoto’s thyroiditis already using thyroid hormone replacement therapy.
Results revealed no statistically significant changes in thyroid function or thyroid antibodies, but the study findings suggested that “AIP may decrease systemic inflammation and modulate the immune system, as evidenced by the decreases in average hs-CRP.”
More Data Suggests AIP Shows Promise for Inflammatory Bowel Disease (IBD)
Another small study, involving 15 patients with inflammatory bowel disease (IBD), concluded that the AIP diet has the potential to significantly improve quality of life in a relatively short time frame — even during the elimination phase of the diet. Results suggested there were clinical benefits regardless of IBD medication use. While more long-term research is needed, the AIP diet has the potential to be an effective adjunctive therapy to conventional treatment.
The Bottom Line: We Are Short on Evidence That Would Link Diet and RA
While there is growing interest in the AIP diet for inflammatory diseases, there remains a need for larger, randomized clinical trials. Conclusive evidence is needed. Without it, the impact of diet on RA remains theoretical.

David Alboukrek, MD
Medical Reviewer
David Alboukrek, MD, is board-certified in internal medicine and rheumatology. He is an affiliate clinical professor at Florida Atlantic University's Charles E. Schmidt College of Medicine, where he has been a preceptor for first and second year medical students, and participates in clinical activities such as elective rotations with the third and fourth year medical students and second and third year internal medicine residents. He is currently chairperson of the Medical Staff Excellence Committee (peer review) at Boca Raton Regional Hospital, where he previously served as chief of medicine from 2011 to 2013. He maintains privileges at Boca Raton Regional Hospital and Delray Medical Center.
Dr. Alboukrek was born in Mexico City and grew up in Guatemala, where he attended medical school. He went on to complete a family medicine residency program in Guatemala City before moving to the United States. He did a one-year fellowship in child psychiatry at the Children's Hospital in Philadelphia, followed by a residency in internal medicine at Berkshire Medical Center in Pittsfield, Massachusetts. He then completed a fellowship in rheumatology at the University of Texas Health Science Center in San Antonio, Texas. Before moving to Boca Raton in 1995, he was in practice with Berkshire Orthopedic Associates in Massachusetts.
Alboukrek has been a member of multiple medical societies in the USA and abroad. He is a fellow of the American College of Rheumatology. He is a member of the Florida Medical Association, Florida Society of Rheumatology, and the Palm Beach County Medical Society. He has had active roles in the Osteoporosis Diagnostic and Treatment Center of South Florida and the RASF–Clinical Research Center, and has provided care to indigent patients at the Whelton Virshup Creaky Joints Arthritis Clinic for many years.
When not at work he is most likely playing pickleball or ping pong somewhere.

Carol Eustice
Author
Carol Eustice was diagnosed with rheumatoid arthritis (RA) at age 19. Having lived her entire adult life with RA, Carol brings first-hand experience of the condition, along with a medical background, to her writing. She attended Cleveland State University in Cleveland, Ohio, earning a Bachelor of Science degree in biology. She is also a registered medical technologist (MT), certified by the American Society for Clinical Pathology.
Carol worked in a hospital laboratory for 16 years, then made a career switch in 1997 to become a writer for The Mining Company, which became About.com and is now VerywellHealth.com. She wrote for the site for 20 years, primarily about arthritis-related diseases. She has also authored two books about arthritis, The Everything Health Guide to Arthritis (2007), and Natural Arthritis Treatment (2012). She is a member of the Association of Rheumatology Health Professionals (ARHP) and the Arthritis Foundation.
- Leaky Gut Syndrome. Cleveland Clinic. April 6, 2022.
- Mu Q, Kirby J, Reilly CM, Luo XM. Leaky Gut as a Danger Signal for Autoimmune Diseases. Frontiers in Immunology. 2017.
- Taneja V. Arthritis Susceptibility and the Gut Microbiome. FEBS Letters. November 17, 2014.
- Brandl C, Bucci L, Schett G, Zaiss MM. Crossing the Barriers: Revisiting the Gut Feeling in Rheumatoid Arthritis. European Journal of Immunology. April 2021.
- Konijeti GG, Kim N, Lewis JD, et al. Efficacy of the Autoimmune Protocol Diet for Inflammatory Bowel Disease. Inflammatory Bowel Diseases. November 2017.
- Abbott RD, Sadowski A, Alt AG. Efficacy of the Autoimmune Protocol Diet as Part of a Multi-Disciplinary, Supported Lifestyle Intervention for Hashimoto’s Thyroiditis. Cureus. April 2019.
- Chandrasekaran A, Groven S, Lewis JD, et al. An Autoimmune Protocol Diet Improves Patient-Reported Quality of Life in Inflammatory Bowel Disease. Crohn’s and Colitis 360. October 2019.