Can Yogurt Upset Your Stomach?

Yogurt, like other ingredients that naturally contain probiotics, is often celebrated for its ability to improve and regulate your digestion, according to an expert review. But for some people it has the opposite effect, causing stomach pain, indigestion, and other gastrointestinal troubles.
Dairy products like yogurt generally provoke two distinct negative health reactions, according to FARE (Food Allergy Resource and Education). One is lactose intolerance, which causes cramping and discomfort that can last for a day or more. The other is a milk allergy, which can cause symptoms ranging from mild rashes and itching to severe breathing difficulties and loss of consciousness.
Stomach pain after eating yogurt is not normal and should be evaluated by your physician.
Lactose Intolerance
If you're lactose intolerant, yogurt can cause stomach pain. Yogurt is made from cow's milk, which contains lactose, a complex sugar that the body can’t absorb. The small intestine can secrete an enzyme called lactase, which breaks down lactose, allowing it to be digested.
Some people begin to lose their ability to digest lactose when they reach adolescence or adulthood, because they naturally begin to make less lactase. When you don’t have enough lactase, the lactose is not digested and causes stomach pain, gas, bloating, cramping and diarrhea, according to Mayo Clinic.
For some people with lactose intolerance, yogurt is easier to handle than milk, because the live and active cultures in yogurt help break down lactose, making it easier to digest. If one brand of yogurt is causing problems, it may be worth experimenting with new yogurt products. Different yogurt brands contain different amounts of lactose, according to the University of Virginia. For example, Greek yogurt typically has less lactose than plain yogurt. You may find that you can tolerate a small serving or even an entire container of your favorite brand.
There are also lactose-free yogurts available, as well as plant-based alternatives that contain no lactose.
Milk Allergy
An allergy is very different from an intolerance. When you have a milk allergy, your immune system overreacts to milk proteins, according to Cleveland Clinic. Milk allergies, which are most common in children, can be deadly.
If you're allergic to milk, you may experience more than just stomach pain after eating yogurt. Other common symptoms include hives, nausea or vomiting, and tingling or swelling in the mouth or throat. More severe symptoms include anaphylactic shock and dangerous blood pressure drops.
Most milk allergies are found in children, and most children will outgrow their allergies. In very rare cases, however, milk allergies can develop suddenly in adults, according to AllergyUK.
A milk allergy is a serious medical condition that needs to be diagnosed by your doctor. Exposure may require emergency treatment.
Yogurt as Treatment
Yogurt is commonly recommended to treat stomach pain related to the stomach flu, food poisoning and other conditions that cause diarrhea. Yogurt may help restore good bacteria in the gut and may shorten the duration and severity of gastrointestinal issues like constipation, bloating, and diarrhea, according to Mayo Clinic.
This positive health effect is due to yogurt’s probiotic cultures. Yogurt is a fermented food ingredient, and naturally contains living microorganisms that can join the colony of trillions of bacteria in your gut. Eating yogurt and other foods with probiotics can maintain or improve the health of your own gut microbiome.
If you're lactose intolerant or have a milk allergy, but want to enjoy yogurt’s healthy effects on digestion, you can also choose other naturally probiotic food ingredients, such as kimchi, or purchase probiotic supplements that are lactose and dairy-free.
- Foods: Beneficial Effects of Yoghurts and Probiotic Fermented Milks and Their Functional Food Potential
- FARE: Milk Allergy vs. Lactose Intolerance
- Mayo Clinic: Lactose Intolerance
- University of Virginia: Managing Lactose Intolerance
- Cleveland Clinic: Milk Allergy
- AllergyUK: Cow's Milk Allergy in Adults
- Mayo Clinic: How Yogurt Supports Healthy Digestion

Waseem Ahmed, MD
Medical Reviewer
Waseem Ahmed, MD, is an assistant professor of medicine in the Karsh Division of Gastroenterology and Hepatology at Cedars-Sinai Medical Center in Los Angeles and serves as Director, Advanced Inflammatory Bowel Disease Fellowship and Education within the F. Widjaja Inflammatory Bowel Disease Institute.
He received his undergraduate degree from the University of Michigan and attended medical school at Indiana University. He then completed an internal medicine residency at New York University, followed by a fellowship in gastroenterology and hepatology at Indiana University, and an advanced fellowship in inflammatory bowel disease at the Jill Roberts Center for Inflammatory Bowel Disease at New York-Presbyterian Hospital/Weill Cornell Medicine. Prior to his current role, Dr. Ahmed served as an assistant professor of medicine within the Crohn’s and Colitis Center at the University of Colorado from 2021-2024.
Dr. Ahmed is passionate about providing innovative, comprehensive, and compassionate care for all patients with inflammatory bowel disease (IBD). His research interests include IBD medical education for patients, providers, and trainees; clinical trials; acute severe ulcerative colitis; and the use of combined advanced targeted therapy in high-risk IBD.
He enjoys spending time with his wife and dog, is an avid follower of professional tennis, and enjoys fine dining.

Diane Marks
Author
Diane Marks started her writing career in 2010 and has been in health care administration for more than 30 years. She holds a registered nurse license from Citizens General Hospital School of Nursing, a Bachelor of Arts in health care education from California University of Pennsylvania and a Master of Science in health administration from the University of Pittsburgh.